How To Install unicycler_scrub on CentOS 8
In this tutorial, we will discuss How To Install unicycler_scrub on CentOS 8
yum package managers.
Also, we will demonstrate how to uninstall and update
unicycler_scrub as well.
One-liner Install Command
If you are only interested in the installation command, here is a quick answer for you:
or if you use
sudo yum makecache && sudo yum -y install unicycler
sudo dnf makecache && sudo dnf -y install unicycler
But if you are interested in the details with step-by-step instructions, the following information will be helpful.
unicycler_scrub and How to Install It?
Short description: hybrid assembly pipeline for bacterial genomes
First things first, you will need access to a server or computer running CentOS 8. This guide was written specifically with a server running CentOS 8 in mind, although it should also work on older, supported versions of the operating system.
Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.
There are several ways to install unicycler_scrub on CentOS 8. You can use (links are clickable):
In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.
Install unicycler_scrub on CentOS 8 using dnf
First, update dnf packages database with
dnf by running the next command:
sudo dnf makecache --refresh
After updating database,
You can install unicycler_scrub using
dnf by running the
sudo dnf -y install unicycler
Install unicycler_scrub on CentOS 8 using yum
Because unicycler_scrub is available in CentOS 8’s default
it is possible to install it from these repositories using the
To begin, update local packages database with
yum using the following command.
sudo yum makecache --refresh
Now can install unicycler_scrub package on your server/computer by running the following command:
sudo yum -y install unicycler
How to upgrade (update) a single package unicycler_scrub using yum?
To update all the packages available on the system:
If you want to update a specific package like unicycler_scrub in this example you should use the following command:
yum update unicycler
To downgrade a package to an earlier version:
yum downgrade unicycler
How to Upgrade unicycler_scrub on CentOS 8 with dnf?
When you run the
dnf update, all system packages with available updates are updated.
However, if you want to upgrade a single package, then you would have to pass the package name as
the argument to the dnf update command.
dnf update unicycler
How To remove unicycler_scrub from CentOS 8
To uninstall only the
unicycler_scrub package you can execute
sudo dnf remove unicycler
Extra info and code examples
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
- Maintainer: Debian Med Packaging Team
- Sources url: https://github.com/rrwick/Unicycler
- Section/Category: science
You now have a full guide on how to install
yum package managers.
Also, we showed how to update manually as a single package and different ways to uninstall
the unicycler_scrub from CentOS 8.