How To Install stacks-setup-database on Fedora 34
In this tutorial, we will discuss How To Install stacks-setup-database on Fedora 34
using dnf
and yum
package managers.
Also, we will demonstrate how to uninstall and update
stacks-setup-database
as well.
One-liner Install Command
If you are only interested in the installation command, here is a quick answer for you:
sudo yum makecache && sudo yum -y install stacks-web
or if you use dnf
:
sudo dnf makecache && sudo dnf -y install stacks-web
But if you are interested in the details with step-by-step instructions, the following information will be helpful.
What is stacks-setup-database
and How to Install It?
Short description: web interface for displaying loci from short-read sequences
First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.
Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.
There are several ways to install stacks-setup-database on Fedora 34. You can use (links are clickable):
In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.
Install stacks-setup-database on Fedora 34 using dnf
First, update dnf packages database with dnf
by running the next command:
sudo dnf makecache --refresh
After updating database,
You can install stacks-setup-database using dnf
by running the
following command:
sudo dnf -y install stacks-web
Install stacks-setup-database on Fedora 34 using yum
Because stacks-setup-database is available in Fedora 34’s default
repositories,
it is possible to install it from these repositories using the yum
packaging
system.
To begin, update local packages database with yum
using the following command.
sudo yum makecache --refresh
Now can install stacks-setup-database package on your server/computer by running the following command:
sudo yum -y install stacks-web
How to upgrade (update) a single package stacks-setup-database using yum?
To update all the packages available on the system:
yum update
If you want to update a specific package like stacks-setup-database in this example you should use the following command:
yum update stacks-web
To downgrade a package to an earlier version:
yum downgrade stacks-web
How to Upgrade stacks-setup-database on Fedora 34 with dnf?
When you run the dnf update
, all system packages with available updates are updated.
However, if you want to upgrade a single package, then you would have to pass the package name as
the argument to the dnf update command.
dnf update stacks-web
How To remove stacks-setup-database from Fedora 34
To uninstall only the stacks-setup-database
package you can execute
the
following command:
sudo dnf remove stacks-web
Extra info and code examples
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. This package provides the web-based viewer which you can use to examine Stacks output that has been loaded into a MySQL database.
- Maintainer: Debian Med Packaging Team
- Sources url: http://creskolab.uoregon.edu/stacks/
- Section/Category: science
Conclusion
You now have a full guide on how to install stacks-setup-database
using dnf
and yum
package managers.
Also, we showed how to update manually as a single package and different ways to uninstall
the stacks-setup-database from Fedora 34.