How To Install slclust on Fedora 34

In this tutorial, we will discuss How To Install slclust on Fedora 34 using dnf and yum package managers. Also, we will demonstrate how to uninstall and update slclust as well.

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install trinityrnaseq
or if you use dnf:
sudo dnf makecache && sudo dnf -y install trinityrnaseq

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is slclust and How to Install It?

First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install slclust on Fedora 34. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install slclust on Fedora 34 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install slclust using dnf by running the following command:

sudo dnf -y install trinityrnaseq

Install slclust on Fedora 34 using yum

Because slclust is available in Fedora 34’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install slclust package on your server/computer by running the following command:

sudo yum -y install trinityrnaseq

How to upgrade (update) a single package slclust using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like slclust in this example you should use the following command:

yum update trinityrnaseq

To downgrade a package to an earlier version:

yum downgrade trinityrnaseq

How to Upgrade slclust on Fedora 34 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update trinityrnaseq

How To remove slclust from Fedora 34

To uninstall only the slclust package you can execute the following command:

sudo dnf remove trinityrnaseq

Extra info and code examples

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

Conclusion

You now have a full guide on how to install slclust using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the slclust from Fedora 34.

See also:

How To Install slclust on Kali Linux

How To Install slclust on Debian 11

How To Install slclust on Fedora 34

How To Install slclust on CentOS 8

How To Install slclust on Ubuntu 22.04

How To Install slclust on Ubuntu 21.04

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