How To Install select_all_rbcontig.pl on Fedora 34

In this tutorial, we will discuss How To Install select_all_rbcontig.pl on Fedora 34 using dnf and yum package managers. Also, we will demonstrate how to uninstall and update select_all_rbcontig.pl as well.

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install bio-rainbow
or if you use dnf:
sudo dnf makecache && sudo dnf -y install bio-rainbow

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is select_all_rbcontig.pl and How to Install It?

First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install select_all_rbcontig.pl on Fedora 34. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install select_all_rbcontig.pl on Fedora 34 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install select_all_rbcontig.pl using dnf by running the following command:

sudo dnf -y install bio-rainbow

Install select_all_rbcontig.pl on Fedora 34 using yum

Because select_all_rbcontig.pl is available in Fedora 34’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install select_all_rbcontig.pl package on your server/computer by running the following command:

sudo yum -y install bio-rainbow

How to upgrade (update) a single package select_all_rbcontig.pl using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like select_all_rbcontig.pl in this example you should use the following command:

yum update bio-rainbow

To downgrade a package to an earlier version:

yum downgrade bio-rainbow

How to Upgrade select_all_rbcontig.pl on Fedora 34 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update bio-rainbow

How To remove select_all_rbcontig.pl from Fedora 34

To uninstall only the select_all_rbcontig.pl package you can execute the following command:

sudo dnf remove bio-rainbow

Extra info and code examples

Efficient tool for clustering and assembling short reads, especially for RAD. Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.

Conclusion

You now have a full guide on how to install select_all_rbcontig.pl using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the select_all_rbcontig.pl from Fedora 34.

See also:

How To Install select_all_rbcontig.pl on Kali Linux

How To Install select_all_rbcontig.pl on Debian 11

How To Install select_all_rbcontig.pl on Fedora 34

How To Install select_all_rbcontig.pl on Ubuntu 22.04

How To Install select_all_rbcontig.pl on Ubuntu 21.04

How To Install select_all_rbcontig.pl on CentOS 8

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