How To Install rep_sep on Ubuntu 22.04

One-liner install command

For those in a hurry, here's a one-line installation command:

sudo apt-get update && sudo apt -y install seqan-apps

But if you are interested in the detailed steps with descriptions, the following information is for you.

What is rep_sep and what are the ways to install it?

Before beginning this tutorial, you will need access to a server or computer running Ubuntu 22.04. This guide was written specifically with a server running Ubuntu 22.04 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install rep_sep on Ubuntu 22.04. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install rep_sep using apt-get

First, update apt database with apt-get using the following command.

sudo apt-get update

After updating apt-get database, You can install rep_sep using apt by running the following command:

sudo apt -y install seqan-apps

Install rep_sep using apt

Because rep_sep is available in Ubuntu 22.04’s default repositories, it is possible to install it from these repositories using the apt packaging system.

To begin, update apt database with apt using the following command.

sudo apt update

After updating apt database, You can install rep_sep using apt by running the following command:

sudo apt -y install seqan-apps

Install rep_sep using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu 22.04. Update apt database with aptitude using the following command.

sudo aptitude update

After updating aptitude database, You can install rep_sep by running the following command:

sudo aptitude -y install seqan-apps

How to upgrade (update) a single package rep_sep using apt-get?

First, you will need to update packages index. Run update command as usual:

sudo apt-get update

Next, to upgrade only the rep_sep, e.g. single package, you should use the following format with the apt-get command/apt command:

sudo apt-get --only-upgrade install seqan-apps

Note that this command will not install any new packages! If you wish to install the package if it doesn't exist you may leave out --only-upgrade part.

sudo apt-get install seqan-apps

How To Uninstall rep_sep from Ubuntu 22.04

To uninstall only the rep_sep package you can execute the following command:

sudo apt-get remove seqan-apps

Uninstall rep_sep and all its dependencies

To uninstall rep_sep and its dependencies that are no longer needed by Ubuntu 22.04, you can use the command below:

sudo apt-get -y autoremove seqan-apps

Remove rep_sep with all configurations and data

To remove rep_sep configuration and data from your system you can run the following purge command:

sudo apt-get -y purge seqan-apps

Remove rep_sep completely (configurations, data and all of its dependencies)

And lastly, you can run the next command to remove absolutely everything related to rep_sep package, e.g.: configurations, data and all of its dependencies. Just use this command:

sudo apt-get -y autoremove --purge seqan-apps

Extra info and code examples

SeqAn is a C++ template library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. This library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance. This package contains the applications dfi, pair_align, micro_razers, seqan_tcoffee, seqcons, razers and tree_recon.

Conclusion

You now have a full guide on how to install rep_sep using apt, apt-get and aptitude tools. Also, we showed how to update as a single package and different ways to uninstall the rep_sep from Ubuntu 22.04.

See also: