How To Install remove_short_seqs on CentOS 8

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install cct

sudo dnf makecache && sudo dnf -y install cct

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is remove_short_seqs and How to Install It?

First things first, you will need access to a server or computer running CentOS 8. This guide was written specifically with a server running CentOS 8 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install remove_short_seqs on CentOS 8. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install remove_short_seqs on CentOS 8 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install remove_short_seqs using dnf by running the following command:

sudo dnf -y install cct

Install remove_short_seqs on CentOS 8 using yum

Because remove_short_seqs is available in CentOS 8’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install remove_short_seqs package on your server/computer by running the following command:

sudo yum -y install cct

How to upgrade (update) a single package remove_short_seqs using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like remove_short_seqs in this example you should use the following command:

yum update cct

To downgrade a package to an earlier version:

yum downgrade cct

How to Upgrade remove_short_seqs on CentOS 8 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update cct

How To remove remove_short_seqs from CentOS 8

To uninstall only the remove_short_seqs package you can execute the following command:

sudo dnf remove cct

Extra info and code examples

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences of interest to existing genomes or sequence collections. The comparisons are conducted using BLAST, and the BLAST results are presented in the form of graphical maps that can also show sequence features, gene and protein names, COG category assignments, and sequence composition characteristics. CCT can generate maps in a variety of sizes, including 400 Megapixel maps suitable for posters. Comparisons can be conducted within a particular species or genus, or all available genomes can be used. The entire map creation process, from downloading sequences to redrawing zoomed maps, can be completed easily using scripts included with the CCT. User-defined features or analysis results can be included on maps, and maps can be extensively customized. To simplify program setup, a CCT virtual machine that includes all dependencies preinstalled is available. Detailed tutorials illustrating the use of CCT are included with the CCT documentation.

Conclusion

You now have a full guide on how to install remove_short_seqs using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the remove_short_seqs from CentOS 8.

See also: