How To Install quiva2DB on Fedora 34

In this tutorial, we will discuss How To Install quiva2DB on Fedora 34 using dnf and yum package managers. Also, we will demonstrate how to uninstall and update quiva2DB as well.

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install dazzdb
or if you use dnf:
sudo dnf makecache && sudo dnf -y install dazzdb

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is quiva2DB and How to Install It?

First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install quiva2DB on Fedora 34. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install quiva2DB on Fedora 34 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install quiva2DB using dnf by running the following command:

sudo dnf -y install dazzdb

Install quiva2DB on Fedora 34 using yum

Because quiva2DB is available in Fedora 34’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install quiva2DB package on your server/computer by running the following command:

sudo yum -y install dazzdb

How to upgrade (update) a single package quiva2DB using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like quiva2DB in this example you should use the following command:

yum update dazzdb

To downgrade a package to an earlier version:

yum downgrade dazzdb

How to Upgrade quiva2DB on Fedora 34 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update dazzdb

How To remove quiva2DB from Fedora 34

To uninstall only the quiva2DB package you can execute the following command:

sudo dnf remove dazzdb

Extra info and code examples

To facilitate the multiple phases of the dazzler assembler, all the read data is organized into what is effectively a database of the reads and their meta-information. The design goals for this data base are as follows: * The database stores the source Pacbio read information in such a way that it can re-create the original input data, thus permitting a user to remove the (effectively redundant) source files. This avoids duplicating the same data, once in the source file and once in the database. * The data base can be built up incrementally, that is new sequence data can be added to the data base over time. * The data base flexibly allows one to store any meta-data desired for reads. This is accomplished with the concept of *tracks* that implementors can add as they need them. * The data is held in a compressed form equivalent to the .dexta and .dexqv files of the data extraction module. Both the .fasta and .quiva information for each read is held in the data base and can be recreated from it. The .quiva information can be added separately and later on if desired. * To facilitate job parallel, cluster operation of the phases of the assembler, the database has a concept of a *current partitioning* in which all the reads that are over a given length and optionally unique to a well, are divided up into *blocks* containing roughly a given number of bases, except possibly the last block which may have a short count. Often programs can be run on blocks or pairs of blocks and each such job is reasonably well balanced as the blocks are all the same size. One must be careful about changing the partition during an assembly as doing so can void the structural validity of any interim block-based results.

Conclusion

You now have a full guide on how to install quiva2DB using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the quiva2DB from Fedora 34.

See also:

How To Install quiva2DB on Debian 11

How To Install quiva2DB on Fedora 34

How To Install quiva2DB on Kali Linux

How To Install quiva2DB on Ubuntu 21.04

How To Install quiva2DB on CentOS 8

How To Install quiva2DB on Ubuntu 22.04

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