How To Install PyroNoiseM on Kali Linux

In this guide, we’ll discuss How To Install PyroNoiseM on Kali Linux. Also, we will demonstrate how to uninstall and update PyroNoiseM.

One-liner install command

For those in a hurry, here's a one-line installation command:

sudo apt-get update && sudo apt -y install ampliconnoise

But if you are interested in the detailed steps with descriptions, the following information is for you.

What is PyroNoiseM and what are the ways to install it?

Before beginning this tutorial, you will need access to a server or computer running Kali Linux. This guide was written specifically with a server running Kali Linux in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install PyroNoiseM on Kali Linux. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install PyroNoiseM using apt-get

First, update apt database with apt-get using the following command.

sudo apt-get update

After updating apt-get database, You can install PyroNoiseM using apt by running the following command:

sudo apt -y install ampliconnoise

Install PyroNoiseM using apt

Because PyroNoiseM is available in Kali Linux’s default repositories, it is possible to install it from these repositories using the apt packaging system.

To begin, update apt database with apt using the following command.

sudo apt update

After updating apt database, You can install PyroNoiseM using apt by running the following command:

sudo apt -y install ampliconnoise

Install PyroNoiseM using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating aptitude database, You can install PyroNoiseM by running the following command:

sudo aptitude -y install ampliconnoise

How to upgrade (update) a single package PyroNoiseM using apt-get?

First, you will need to update packages index. Run update command as usual:

sudo apt-get update

Next, to upgrade only the PyroNoiseM, e.g. single package, you should use the following format with the apt-get command/apt command:

sudo apt-get --only-upgrade install ampliconnoise

Note that this command will not install any new packages! If you wish to install the package if it doesn't exist you may leave out --only-upgrade part.

How To Uninstall PyroNoiseM from Kali Linux

To uninstall only the PyroNoiseM package you can execute the following command:

sudo apt-get remove ampliconnoise

Uninstall PyroNoiseM and all its dependencies

To uninstall PyroNoiseM and its dependencies that are no longer needed by Kali Linux, you can use the command below:

sudo apt-get -y autoremove ampliconnoise

Remove PyroNoiseM with all configurations and data

To remove PyroNoiseM configuration and data from your system you can run the following purge command:

sudo apt-get -y purge ampliconnoise

Remove PyroNoiseM completely (configurations, data and all of its dependencies)

And lastly, you can run the next command to remove absolutely everything related to PyroNoiseM package, e.g.: configurations, data and all of its dependencies. Just use this command:

sudo apt-get -y autoremove --purge ampliconnoise

Extra info and code examples

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts: Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Conclusion

You now have a full guide on how to install PyroNoiseM using apt, apt-get and aptitude tools. Also, we showed how to update as a single package and different ways to uninstall the PyroNoiseM from Kali Linux.

See also:

How To Install PyroNoiseM on Kali Linux

How To Install PyroNoiseM on Debian 11

How To Install PyroNoiseM on Fedora 34

How To Install PyroNoiseM on CentOS 8

How To Install PyroNoiseM on Ubuntu 22.04

How To Install PyroNoiseM on Ubuntu 21.04

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