How To Install primeGSRf on Debian 11

In this guide, we’ll discuss How To Install primeGSRf on Debian 11. Also, we will demonstrate how to uninstall and update primeGSRf.

One-liner install command

For those in a hurry, here's a one-line installation command:

sudo apt-get update && sudo apt -y install prime-phylo

But if you are interested in the detailed steps with descriptions, the following information is for you.

What is primeGSRf and what are the ways to install it?

Before beginning this tutorial, you will need access to a server or computer running Debian 11. This guide was written specifically with a server running Debian 11 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install primeGSRf on Debian 11. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install primeGSRf using apt-get

First, update apt database with apt-get using the following command.

sudo apt-get update

After updating apt-get database, You can install primeGSRf using apt by running the following command:

sudo apt -y install prime-phylo

Install primeGSRf using apt

Because primeGSRf is available in Debian 11’s default repositories, it is possible to install it from these repositories using the apt packaging system.

To begin, update apt database with apt using the following command.

sudo apt update

After updating apt database, You can install primeGSRf using apt by running the following command:

sudo apt -y install prime-phylo

Install primeGSRf using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Debian 11. Update apt database with aptitude using the following command.

sudo aptitude update

After updating aptitude database, You can install primeGSRf by running the following command:

sudo aptitude -y install prime-phylo

How to upgrade (update) a single package primeGSRf using apt-get?

First, you will need to update packages index. Run update command as usual:

sudo apt-get update

Next, to upgrade only the primeGSRf, e.g. single package, you should use the following format with the apt-get command/apt command:

sudo apt-get --only-upgrade install prime-phylo

Note that this command will not install any new packages! If you wish to install the package if it doesn't exist you may leave out --only-upgrade part.

How To Uninstall primeGSRf from Debian 11

To uninstall only the primeGSRf package you can execute the following command:

sudo apt-get remove prime-phylo

Uninstall primeGSRf and all its dependencies

To uninstall primeGSRf and its dependencies that are no longer needed by Debian 11, you can use the command below:

sudo apt-get -y autoremove prime-phylo

Remove primeGSRf with all configurations and data

To remove primeGSRf configuration and data from your system you can run the following purge command:

sudo apt-get -y purge prime-phylo

Remove primeGSRf completely (configurations, data and all of its dependencies)

And lastly, you can run the next command to remove absolutely everything related to primeGSRf package, e.g.: configurations, data and all of its dependencies. Just use this command:

sudo apt-get -y autoremove --purge prime-phylo

Extra info and code examples

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees. The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Conclusion

You now have a full guide on how to install primeGSRf using apt, apt-get and aptitude tools. Also, we showed how to update as a single package and different ways to uninstall the primeGSRf from Debian 11.

See also:

How To Install primeGSRf on Kali Linux

How To Install primeGSRf on Debian 11

How To Install primeGSRf on Ubuntu 22.04

How To Install primeGSRf on Fedora 34

How To Install primeGSRf on CentOS 8

How To Install primeGSRf on Ubuntu 21.04

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