How To Install nencvalid.2 on Ubuntu 22.04

One-liner install command

For those in a hurry, here's a one-line installation command:

sudo apt-get update && sudo apt -y install sra-toolkit

But if you are interested in the detailed steps with descriptions, the following information is for you.

What is nencvalid.2 and what are the ways to install it?

Before beginning this tutorial, you will need access to a server or computer running Ubuntu 22.04. This guide was written specifically with a server running Ubuntu 22.04 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install nencvalid.2 on Ubuntu 22.04. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install nencvalid.2 using apt-get

First, update apt database with apt-get using the following command.

sudo apt-get update

After updating apt-get database, You can install nencvalid.2 using apt by running the following command:

sudo apt -y install sra-toolkit

Install nencvalid.2 using apt

Because nencvalid.2 is available in Ubuntu 22.04’s default repositories, it is possible to install it from these repositories using the apt packaging system.

To begin, update apt database with apt using the following command.

sudo apt update

After updating apt database, You can install nencvalid.2 using apt by running the following command:

sudo apt -y install sra-toolkit

Install nencvalid.2 using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu 22.04. Update apt database with aptitude using the following command.

sudo aptitude update

After updating aptitude database, You can install nencvalid.2 by running the following command:

sudo aptitude -y install sra-toolkit

How to upgrade (update) a single package nencvalid.2 using apt-get?

First, you will need to update packages index. Run update command as usual:

sudo apt-get update

Next, to upgrade only the nencvalid.2, e.g. single package, you should use the following format with the apt-get command/apt command:

sudo apt-get --only-upgrade install sra-toolkit

Note that this command will not install any new packages! If you wish to install the package if it doesn't exist you may leave out --only-upgrade part.

sudo apt-get install sra-toolkit

How To Uninstall nencvalid.2 from Ubuntu 22.04

To uninstall only the nencvalid.2 package you can execute the following command:

sudo apt-get remove sra-toolkit

Uninstall nencvalid.2 and all its dependencies

To uninstall nencvalid.2 and its dependencies that are no longer needed by Ubuntu 22.04, you can use the command below:

sudo apt-get -y autoremove sra-toolkit

Remove nencvalid.2 with all configurations and data

To remove nencvalid.2 configuration and data from your system you can run the following purge command:

sudo apt-get -y purge sra-toolkit

Remove nencvalid.2 completely (configurations, data and all of its dependencies)

And lastly, you can run the next command to remove absolutely everything related to nencvalid.2 package, e.g.: configurations, data and all of its dependencies. Just use this command:

sudo apt-get -y autoremove --purge sra-toolkit

Extra info and code examples

Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq. The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE. The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site. Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.

Conclusion

You now have a full guide on how to install nencvalid.2 using apt, apt-get and aptitude tools. Also, we showed how to update as a single package and different ways to uninstall the nencvalid.2 from Ubuntu 22.04.

See also: