How To Install MapAlignerIdentification on Fedora 34

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install openms

sudo dnf makecache && sudo dnf -y install openms

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is MapAlignerIdentification and How to Install It?

First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install MapAlignerIdentification on Fedora 34. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install MapAlignerIdentification on Fedora 34 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install MapAlignerIdentification using dnf by running the following command:

sudo dnf -y install openms

Install MapAlignerIdentification on Fedora 34 using yum

Because MapAlignerIdentification is available in Fedora 34’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install MapAlignerIdentification package on your server/computer by running the following command:

sudo yum -y install openms

How to upgrade (update) a single package MapAlignerIdentification using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like MapAlignerIdentification in this example you should use the following command:

yum update openms

To downgrade a package to an earlier version:

yum downgrade openms

How to Upgrade MapAlignerIdentification on Fedora 34 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update openms

How To remove MapAlignerIdentification from Fedora 34

To uninstall only the MapAlignerIdentification package you can execute the following command:

sudo dnf remove openms

Extra info and code examples

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are : - TOPPView: A viewer for mass spectrometry data. - TOPPAS: An assistant for GUI-driven TOPP workflow design. - DTAExtractor: Extracts spectra of an MS run file to several files in DTA format. - FileConverter: Converts between different MS file formats. - FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files. - SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks. - BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. - InternalCalibration: Applies an internal calibration. - PTModel: Trains a model for the prediction of proteotypic peptides from a training set. - RTPredict: Predicts retention times for peptides using a model trained by RTModel. - ExecutePipeline: Executes workflows created by TOPPAS.

Conclusion

You now have a full guide on how to install MapAlignerIdentification using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the MapAlignerIdentification from Fedora 34.

See also: