How To Install maffilter on CentOS 8
In this tutorial, we will discuss How To Install maffilter on CentOS 8
yum package managers.
Also, we will demonstrate how to uninstall and update
maffilter as well.
One-liner Install Command
If you are only interested in the installation command, here is a quick answer for you:
or if you use
sudo yum makecache && sudo yum -y install maffilter
sudo dnf makecache && sudo dnf -y install maffilter
But if you are interested in the details with step-by-step instructions, the following information will be helpful.
maffilter and How to Install It?
Short description: process genome alignment in the Multiple Alignment Format
First things first, you will need access to a server or computer running CentOS 8. This guide was written specifically with a server running CentOS 8 in mind, although it should also work on older, supported versions of the operating system.
Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.
There are several ways to install maffilter on CentOS 8. You can use (links are clickable):
In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.
Install maffilter on CentOS 8 using dnf
First, update dnf packages database with
dnf by running the next command:
sudo dnf makecache --refresh
After updating database,
You can install maffilter using
dnf by running the
sudo dnf -y install maffilter
Install maffilter on CentOS 8 using yum
Because maffilter is available in CentOS 8’s default
it is possible to install it from these repositories using the
To begin, update local packages database with
yum using the following command.
sudo yum makecache --refresh
Now can install maffilter package on your server/computer by running the following command:
sudo yum -y install maffilter
How to upgrade (update) a single package maffilter using yum?
To update all the packages available on the system:
If you want to update a specific package like maffilter in this example you should use the following command:
yum update maffilter
To downgrade a package to an earlier version:
yum downgrade maffilter
How to Upgrade maffilter on CentOS 8 with dnf?
When you run the
dnf update, all system packages with available updates are updated.
However, if you want to upgrade a single package, then you would have to pass the package name as
the argument to the dnf update command.
dnf update maffilter
How To remove maffilter from CentOS 8
To uninstall only the
maffilter package you can execute
sudo dnf remove maffilter
Extra info and code examples
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores. * It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
- Maintainer: Debian Med Packaging Team
- Sources url: https://jydu.github.io/maffilter/
- Section/Category: science
You now have a full guide on how to install
yum package managers.
Also, we showed how to update manually as a single package and different ways to uninstall
the maffilter from CentOS 8.