How To Install getOrthologList on Kali Linux

In this guide, we’ll discuss How To Install getOrthologList on Kali Linux. Also, we will demonstrate how to uninstall and update getOrthologList.

One-liner install command

For those in a hurry, here's a one-line installation command:

sudo apt-get update && sudo apt -y install progressivemauve

But if you are interested in the detailed steps with descriptions, the following information is for you.

What is getOrthologList and what are the ways to install it?

Before beginning this tutorial, you will need access to a server or computer running Kali Linux. This guide was written specifically with a server running Kali Linux in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install getOrthologList on Kali Linux. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install getOrthologList using apt-get

First, update apt database with apt-get using the following command.

sudo apt-get update

After updating apt-get database, You can install getOrthologList using apt by running the following command:

sudo apt -y install progressivemauve

Install getOrthologList using apt

Because getOrthologList is available in Kali Linux’s default repositories, it is possible to install it from these repositories using the apt packaging system.

To begin, update apt database with apt using the following command.

sudo apt update

After updating apt database, You can install getOrthologList using apt by running the following command:

sudo apt -y install progressivemauve

Install getOrthologList using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating aptitude database, You can install getOrthologList by running the following command:

sudo aptitude -y install progressivemauve

How to upgrade (update) a single package getOrthologList using apt-get?

First, you will need to update packages index. Run update command as usual:

sudo apt-get update

Next, to upgrade only the getOrthologList, e.g. single package, you should use the following format with the apt-get command/apt command:

sudo apt-get --only-upgrade install progressivemauve

Note that this command will not install any new packages! If you wish to install the package if it doesn't exist you may leave out --only-upgrade part.

How To Uninstall getOrthologList from Kali Linux

To uninstall only the getOrthologList package you can execute the following command:

sudo apt-get remove progressivemauve

Uninstall getOrthologList and all its dependencies

To uninstall getOrthologList and its dependencies that are no longer needed by Kali Linux, you can use the command below:

sudo apt-get -y autoremove progressivemauve

Remove getOrthologList with all configurations and data

To remove getOrthologList configuration and data from your system you can run the following purge command:

sudo apt-get -y purge progressivemauve

Remove getOrthologList completely (configurations, data and all of its dependencies)

And lastly, you can run the next command to remove absolutely everything related to getOrthologList package, e.g.: configurations, data and all of its dependencies. Just use this command:

sudo apt-get -y autoremove --purge progressivemauve

Extra info and code examples

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface. Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. Mauve is developed at the University of Wisconsin.

Conclusion

You now have a full guide on how to install getOrthologList using apt, apt-get and aptitude tools. Also, we showed how to update as a single package and different ways to uninstall the getOrthologList from Kali Linux.

See also:

How To Install getOrthologList on Kali Linux

How To Install getOrthologList on CentOS 8

How To Install getOrthologList on Ubuntu 22.04

How To Install getOrthologList on Ubuntu 21.04

How To Install getOrthologList on Debian 11

How To Install getOrthologList on Fedora 34

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