How To Install getOrthologList on Fedora 34

In this tutorial, we will discuss How To Install getOrthologList on Fedora 34 using dnf and yum package managers. Also, we will demonstrate how to uninstall and update getOrthologList as well.

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install progressivemauve
or if you use dnf:
sudo dnf makecache && sudo dnf -y install progressivemauve

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is getOrthologList and How to Install It?

First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install getOrthologList on Fedora 34. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install getOrthologList on Fedora 34 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install getOrthologList using dnf by running the following command:

sudo dnf -y install progressivemauve

Install getOrthologList on Fedora 34 using yum

Because getOrthologList is available in Fedora 34’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install getOrthologList package on your server/computer by running the following command:

sudo yum -y install progressivemauve

How to upgrade (update) a single package getOrthologList using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like getOrthologList in this example you should use the following command:

yum update progressivemauve

To downgrade a package to an earlier version:

yum downgrade progressivemauve

How to Upgrade getOrthologList on Fedora 34 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update progressivemauve

How To remove getOrthologList from Fedora 34

To uninstall only the getOrthologList package you can execute the following command:

sudo dnf remove progressivemauve

Extra info and code examples

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface. Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. Mauve is developed at the University of Wisconsin.

Conclusion

You now have a full guide on how to install getOrthologList using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the getOrthologList from Fedora 34.

See also:

How To Install getOrthologList on CentOS 8

How To Install getOrthologList on Ubuntu 22.04

How To Install getOrthologList on Ubuntu 21.04

How To Install getOrthologList on Debian 11

How To Install getOrthologList on Kali Linux

How To Install getOrthologList on Fedora 34

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