How To Install getOrthologList on Fedora 34
In this tutorial, we will discuss How To Install getOrthologList on Fedora 34
yum package managers.
Also, we will demonstrate how to uninstall and update
getOrthologList as well.
If you are only interested in the installation command, here is a quick answer for you:
or if you use
sudo yum makecache && sudo yum -y install progressivemauve
sudo dnf makecache && sudo dnf -y install progressivemauve
But if you are interested in the details with step-by-step instructions, the following information will be helpful.
Short description: multiple genome alignment algorithms
First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.
Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.
There are several ways to install getOrthologList on Fedora 34. You can use (links are clickable):
In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.
First, update dnf packages database with
dnf by running the next command:
sudo dnf makecache --refresh
After updating database,
You can install getOrthologList using
dnf by running the
sudo dnf -y install progressivemauve
Because getOrthologList is available in Fedora 34’s default
it is possible to install it from these repositories using the
To begin, update local packages database with
yum using the following command.
sudo yum makecache --refresh
Now can install getOrthologList package on your server/computer by running the following command:
sudo yum -y install progressivemauve
To update all the packages available on the system:
If you want to update a specific package like getOrthologList in this example you should use the following command:
yum update progressivemauve
To downgrade a package to an earlier version:
yum downgrade progressivemauve
When you run the
dnf update, all system packages with available updates are updated.
However, if you want to upgrade a single package, then you would have to pass the package name as
the argument to the dnf update command.
dnf update progressivemauve
To uninstall only the
getOrthologList package you can execute
sudo dnf remove progressivemauve
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface. Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition. Mauve is developed at the University of Wisconsin.
You now have a full guide on how to install
yum package managers.
Also, we showed how to update manually as a single package and different ways to uninstall
the getOrthologList from Fedora 34.