How To Install get_contig_stats.pl on Fedora 34

In this tutorial, we will discuss How To Install get_contig_stats.pl on Fedora 34 using dnf and yum package managers. Also, we will demonstrate how to uninstall and update get_contig_stats.pl as well.

One-liner Install Command

If you are only interested in the installation command, here is a quick answer for you:

sudo yum makecache && sudo yum -y install nanook
or if you use dnf:
sudo dnf makecache && sudo dnf -y install nanook

But if you are interested in the details with step-by-step instructions, the following information will be helpful.

What is get_contig_stats.pl and How to Install It?

First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install get_contig_stats.pl on Fedora 34. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install get_contig_stats.pl on Fedora 34 using dnf

First, update dnf packages database with dnf by running the next command:

sudo dnf makecache --refresh

After updating database, You can install get_contig_stats.pl using dnf by running the following command:

sudo dnf -y install nanook

Install get_contig_stats.pl on Fedora 34 using yum

Because get_contig_stats.pl is available in Fedora 34’s default repositories, it is possible to install it from these repositories using the yum packaging system.

To begin, update local packages database with yum using the following command.

sudo yum makecache --refresh

Now can install get_contig_stats.pl package on your server/computer by running the following command:

sudo yum -y install nanook

How to upgrade (update) a single package get_contig_stats.pl using yum?

To update all the packages available on the system:

yum update

If you want to update a specific package like get_contig_stats.pl in this example you should use the following command:

yum update nanook

To downgrade a package to an earlier version:

yum downgrade nanook

How to Upgrade get_contig_stats.pl on Fedora 34 with dnf?

When you run the dnf update, all system packages with available updates are updated. However, if you want to upgrade a single package, then you would have to pass the package name as the argument to the dnf update command.

dnf update nanook

How To remove get_contig_stats.pl from Fedora 34

To uninstall only the get_contig_stats.pl package you can execute the following command:

sudo dnf remove nanook

Extra info and code examples

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles. NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

Conclusion

You now have a full guide on how to install get_contig_stats.pl using dnf and yum package managers. Also, we showed how to update manually as a single package and different ways to uninstall the get_contig_stats.pl from Fedora 34.

See also:

How To Install get_contig_stats.pl on Kali Linux

How To Install get_contig_stats.pl on Debian 11

How To Install get_contig_stats.pl on Fedora 34

How To Install get_contig_stats.pl on CentOS 8

How To Install get_contig_stats.pl on Ubuntu 22.04

How To Install get_contig_stats.pl on Ubuntu 21.04

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