How To Install diamond-aligner on Ubuntu 22.04

One-liner install command

For those in a hurry, here's a one-line installation command:

sudo apt-get update && sudo apt -y install diamond-aligner

But if you are interested in the detailed steps with descriptions, the following information is for you.

What is diamond-aligner and what are the ways to install it?

Before beginning this tutorial, you will need access to a server or computer running Ubuntu 22.04. This guide was written specifically with a server running Ubuntu 22.04 in mind, although it should also work on older, supported versions of the operating system.

Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.

There are several ways to install diamond-aligner on Ubuntu 22.04. You can use (links are clickable):

In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.

Install diamond-aligner using apt-get

First, update apt database with apt-get using the following command.

sudo apt-get update

After updating apt-get database, You can install diamond-aligner using apt by running the following command:

sudo apt -y install diamond-aligner

Install diamond-aligner using apt

Because diamond-aligner is available in Ubuntu 22.04’s default repositories, it is possible to install it from these repositories using the apt packaging system.

To begin, update apt database with apt using the following command.

sudo apt update

After updating apt database, You can install diamond-aligner using apt by running the following command:

sudo apt -y install diamond-aligner

Install diamond-aligner using aptitude

If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Ubuntu 22.04. Update apt database with aptitude using the following command.

sudo aptitude update

After updating aptitude database, You can install diamond-aligner by running the following command:

sudo aptitude -y install diamond-aligner

How to upgrade (update) a single package diamond-aligner using apt-get?

First, you will need to update packages index. Run update command as usual:

sudo apt-get update

Next, to upgrade only the diamond-aligner, e.g. single package, you should use the following format with the apt-get command/apt command:

sudo apt-get --only-upgrade install diamond-aligner

Note that this command will not install any new packages! If you wish to install the package if it doesn't exist you may leave out --only-upgrade part.

sudo apt-get install diamond-aligner

How To Uninstall diamond-aligner from Ubuntu 22.04

To uninstall only the diamond-aligner package you can execute the following command:

sudo apt-get remove diamond-aligner

Uninstall diamond-aligner and all its dependencies

To uninstall diamond-aligner and its dependencies that are no longer needed by Ubuntu 22.04, you can use the command below:

sudo apt-get -y autoremove diamond-aligner

Remove diamond-aligner with all configurations and data

To remove diamond-aligner configuration and data from your system you can run the following purge command:

sudo apt-get -y purge diamond-aligner

Remove diamond-aligner completely (configurations, data and all of its dependencies)

And lastly, you can run the next command to remove absolutely everything related to diamond-aligner package, e.g.: configurations, data and all of its dependencies. Just use this command:

sudo apt-get -y autoremove --purge diamond-aligner

Extra info and code examples

DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000.

Conclusion

You now have a full guide on how to install diamond-aligner using apt, apt-get and aptitude tools. Also, we showed how to update as a single package and different ways to uninstall the diamond-aligner from Ubuntu 22.04.

See also: