How To Install config.PLS on Kali Linux
In this guide, we’ll discuss How To Install config.PLS on Kali Linux.
Also, we will demonstrate how to uninstall and update
config.PLS
.
One-liner install command
For those in a hurry, here's a one-line installation command:
sudo apt-get update && sudo apt -y install libchado-perl
But if you are interested in the detailed steps with descriptions, the following information is for you.
What is config.PLS
and what are
the ways to install it?
Short description: database schema and tools for genomic data
Before beginning this tutorial, you will need access to a server or computer running Kali Linux. This guide was written specifically with a server running Kali Linux in mind, although it should also work on older, supported versions of the operating system.
Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.
There are several ways to install config.PLS on Kali Linux. You can use (links are clickable):
In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.
Install config.PLS using apt-get
First, update apt database with apt-get
using the following command.
sudo apt-get update
After updating apt-get
database,
You can install config.PLS using apt
by running the
following command:
sudo apt -y install libchado-perl
Install config.PLS using apt
Because config.PLS is available in Kali Linux’s default repositories, it is possible to install it from these repositories using the apt packaging system.
To begin, update apt database with apt
using the following command.
sudo apt update
After updating apt
database,
You can install config.PLS using apt
by running the
following command:
sudo apt -y install libchado-perl
Install config.PLS using aptitude
If you want to follow this method, you might need to install aptitude first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude update
After updating aptitude
database,
You can install config.PLS by running the following command:
sudo aptitude -y install libchado-perl
How to upgrade (update) a single package config.PLS using apt-get?
First, you will need to update packages index. Run update
command as
usual:
sudo apt-get update
Next, to upgrade only the config.PLS, e.g. single package, you should use the following format with the apt-get command/apt command:
sudo apt-get --only-upgrade install libchado-perl
Note that this command will not install any new packages! If you wish to install the
package if it doesn't exist you may leave out --only-upgrade
part.
It's Good to Know:
sudo apt-get install libchado-perl
This will upgrade the package even if is already installed.
How To Uninstall config.PLS from Kali Linux
To uninstall only the config.PLS
package you can execute
the
following command:
sudo apt-get remove libchado-perl
Uninstall config.PLS and all its dependencies
To uninstall config.PLS and its dependencies that are no longer needed by Kali Linux, you can use the command below:
sudo apt-get -y autoremove libchado-perl
Remove config.PLS with all configurations and data
To remove config.PLS configuration and data
from your system you can run the following purge
command:
sudo apt-get -y purge libchado-perl
Remove config.PLS completely (configurations, data and all of its dependencies)
And lastly, you can run the next command to remove absolutely everything related to config.PLS package, e.g.: configurations, data and all of its dependencies. Just use this command:
sudo apt-get -y autoremove --purge libchado-perl
Extra info and code examples
Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.
- Maintainer: Debian Med Packaging Team
- Sources url: http://gmod.org/wiki/Chado
- Section/Category: perl
Conclusion
You now have a full guide on how to install config.PLS
using apt, apt-get and aptitude tools.
Also, we showed how to update as a single package and different ways to uninstall
the config.PLS from Kali Linux.