How To Install cd-hit on Fedora 34
In this tutorial, we will discuss How To Install cd-hit on Fedora 34
yum package managers.
Also, we will demonstrate how to uninstall and update
cd-hit as well.
One-liner Install Command
If you are only interested in the installation command, here is a quick answer for you:
or if you use
sudo yum makecache && sudo yum -y install cd-hit
sudo dnf makecache && sudo dnf -y install cd-hit
But if you are interested in the details with step-by-step instructions, the following information will be helpful.
cd-hit and How to Install It?
Short description: suite of programs designed to quickly group sequences
First things first, you will need access to a server or computer running Fedora 34. This guide was written specifically with a server running Fedora 34 in mind, although it should also work on older, supported versions of the operating system.
Also, make sure you are running a regular, non-root user with sudo privileges configured on your server. When you have an account available, log in as your non-root user to begin.
There are several ways to install cd-hit on Fedora 34. You can use (links are clickable):
In the following sections, we will describe each method in detail. You can choose one of them or refer to the recommended one.
Install cd-hit on Fedora 34 using dnf
First, update dnf packages database with
dnf by running the next command:
sudo dnf makecache --refresh
After updating database,
You can install cd-hit using
dnf by running the
sudo dnf -y install cd-hit
Install cd-hit on Fedora 34 using yum
Because cd-hit is available in Fedora 34’s default
it is possible to install it from these repositories using the
To begin, update local packages database with
yum using the following command.
sudo yum makecache --refresh
Now can install cd-hit package on your server/computer by running the following command:
sudo yum -y install cd-hit
How to upgrade (update) a single package cd-hit using yum?
To update all the packages available on the system:
If you want to update a specific package like cd-hit in this example you should use the following command:
yum update cd-hit
To downgrade a package to an earlier version:
yum downgrade cd-hit
How to Upgrade cd-hit on Fedora 34 with dnf?
When you run the
dnf update, all system packages with available updates are updated.
However, if you want to upgrade a single package, then you would have to pass the package name as
the argument to the dnf update command.
dnf update cd-hit
How To remove cd-hit from Fedora 34
To uninstall only the
cd-hit package you can execute
sudo dnf remove cd-hit
Extra info and code examples
cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.
- Maintainer: Debian Med Packaging Team
- Sources url: http://weizhong-lab.ucsd.edu/cd-hit/
- Section/Category: science
You now have a full guide on how to install
yum package managers.
Also, we showed how to update manually as a single package and different ways to uninstall
the cd-hit from Fedora 34.